{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Calculating the pairwise RMSD of a trajectory\n", "\n", "**Last updated:** June 26, 2020 with MDAnalysis 1.0.0\n", "\n", "**Minimum version of MDAnalysis:** 0.17.0\n", "\n", "**Packages required:**\n", " \n", "* MDAnalysis (Michaud-Agrawal *et al.*, 2011, Gowers *et al.*, 2016)\n", "* MDAnalysisTests\n", "* matplotlib\n", "\n", "**See also**\n", "\n", "* [1D RMSD](rmsd.ipynb)\n", "* [RMSF](rmsf.ipynb)\n", "\n", "\n", "