{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Aligning a trajectory to itself\n", "\n", "We use `align.AlignTraj` to align a trajectory to a reference frame and write it to a file.\n", "\n", "**Last updated:** June 26, 2020 with MDAnalysis 1.0.0\n", "\n", "**Minimum version of MDAnalysis:** 1.0.0\n", "\n", "**Packages required:**\n", " \n", "* MDAnalysis (Michaud-Agrawal *et al.*, 2011, Gowers *et al.*, 2016)\n", "* MDAnalysisTests\n", "\n", "**See also**\n", "\n", "* [Aligning a trajectory to a frame from another](aligning_trajectory.ipynb)\n", "* [Aligning a structure to another](aligning_structure_to_another.ipynb)\n", "* [RMSD](rmsd.ipynb)\n", " \n", "\n", "